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Plant, Cell & Environment

Wiley

Preprints posted in the last 30 days, ranked by how well they match Plant, Cell & Environment's content profile, based on 78 papers previously published here. The average preprint has a 0.08% match score for this journal, so anything above that is already an above-average fit.

1
Lack of co-ordination of stomatal, hydraulic and leaf browning traits in 16 perennial Australian grass species of differing climate origins

Arjunan, K.; Jacob, V.; Yang, J.; Choat, B.; Pendall, E.; Power, S.; Tissue, D.; Medlyn, B.

2026-07-06 ecology 10.64898/2026.07.04.736528 medRxiv
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Grasslands are vulnerable to increasing drought with global warming, but process-based models lack the mechanistic knowledge required to predict the magnitude of drought impacts. While a plant hydraulics framework has been successful in advancing process understanding of drought responses in trees, and how drought responses vary across rainfall gradients, similar approaches have rarely been applied to grasses. Here, we quantified the progression of key drought response processes in sixteen dominant perennial grasses (seven C3 and nine C4) with differing climatic origins across eastern Australia. We found that stomatal closure, hydraulic impairment and leaf browning occurred concurrently, in contrast to the progressive sequence typically observed in trees. We also found that drought response traits were not correlated with species climate of origin. The early impairment of leaf hydraulic conductance and leaf browning along with the lack of correlation with climate of origin suggest that grasses may employ fundamentally different strategies to adapt to low water availability than trees. These results highlight the need for grass-specific parameterization of drought responses in process-based models.

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Beyond climatic drought indices : an hydraulic approach to quantifying forest water stress

Cochard, H.

2026-07-15 plant biology 10.64898/2026.07.13.738371 medRxiv
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The article introduces a new Forest Stress Index (ISF) based on a plant hydraulic modelling approach rather than classical climatic drought indices. Unlike other index like scPDSI or SPEI, ISF is grounded in xylem embolism dynamics simulated with the mechanistic SurEau model. The goal is to better link climatic anomalies to tree physiological functioning and mortality risk. ISF is defined using a locally adapted ideotype characterized by an optimal P50 value under a reference hydraulic functioning threshold. Simulations are performed across Europe and France using multiple climate datasets. The index is robust to model parameterization choices and assumptions about plant functional traits. Results show strong spatial and temporal consistency and significant correlations with SPEI and scPDSI. However, ISF more strongly highlights extreme drought years and exhibits a more skewed distribution. Future projections under SSP5-8.5 indicate a widespread increase in hydraulic stress with strong regional contrasts. Overall, ISF provides a mechanistic and complementary drought indicator more directly linked to forest mortality processes.

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Effects of an increase in water temperature on inter- and transgenerational plasticity reveal a short-term metabolic and phenotypic memory in an aquatic plant species

Loupit, G.; Sancharme, M.; Petriacq, P.; Valls Fonayet, J.; Bittebiere, A.-K.

2026-07-07 plant biology 10.64898/2026.07.06.736556 medRxiv
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Transgenerational plasticity can shape plant phenotype and influence plant response to environmental changes in interaction with the current conditions. While how past stress interact with either current optimal or stress conditions is increasingly documented within a single plant, transgenerational plasticity remains particularly poorly understood especially at the metabolome level. In our study, we investigated whether heat stress induces transgenerational metabolic and phenotypic modifications along two successive clonal ramet generations of the sub-Antarctic aquatic plant Limosella australis. We performed untargeted metabolomic approaches and measured morphologic and performance traits, to assess both transgenerational plasticity of the metabolome and the phenotype. We found that heat stress remodelled the metabolic profile and influenced the foraging strategy of our clonal plant, and that some of these metabolic changes persisted into the first clonal generation. This one therefore adopted an intermediate growth strategy, even though culture conditions were optimal. By comparing differentially accumulated features between daughter ramets from heat stressed mother ramets and from unstressed mother ramets, we identified common and specific metabolites accumulation to heat stress response, belonging to diverse compound families. However, we did not observe any adaptative advantage and any metabolic imprint during another heat stress applied on the second clonal generation. This work provides especially new clues into how plant metabolome integrates and transfers previous stressed clonal generation's information.

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Caught a chill? The relationship between canker disease susceptibility and the vulnerability to freeze events in apricot trees.

Charrier, G.; Charra-Vaskou, K.; Courthieu, N.; Lalji, J.; Lamacque, L.; Morris, C.; Sudre, P.; Venisse, J.-S.; Chamet, C.

2026-07-13 plant biology 10.64898/2026.07.12.738016 medRxiv
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Bacterial canker remains a major constraint affecting apricot production in South-East of France. It is primarily caused by Pseudomonas syringae, a Gram-negative bacterium, many strains of which exhibit ice nucleation activity. By promoting ice formation at relatively high subzero temperatures, ice nucleation-active bacteria may facilitate tissue disruption and pathogen entry. Concurrently, climate-driven shifts toward warmer winter-spring periods have advanced flowering phenology, increasing exposure to late frost events. Despite breeders having developed less susceptible varieties to bacterial canker and early flowering varieties, the link between these traits and frost sensitivity, an emerging risk in this location, remains unresolved. Here, we have evaluated the links between canker susceptibility and frost sensitivity using three cultivar pairs contrasting in disease response and flowering time. Ice nucleation temperature was measured in excised buds under controlled conditions throughout the frost-risk period, alongside field-based diameter variation monitoring over two years. Disease susceptibility (P < 0.001), phenology (P = 0.003), varieties (P < 0.001), locations (P < 0.001), and sampling date (P < 0.001) significantly affected nucleation temperature, whereas epiphytic bacterial abundance and xylem vessel diameter did not. Trees froze at higher temperatures in situ than in laboratory assays (1 to -2{degrees}C versus -3 to 4{degrees}C, respectively), indicating strong environmental modulation of freezing processes beyond Psy-like bacterial activity, which is reflected in contrasting disease susceptibilities (P < 0.001) and precocities (P < 0.001). These results shed light on the complexity of the freezing process in trees under natural conditions. We discuss the potential roles of microclimatic conditions and alternative ice nucleation sources beyond Psy-like bacteria in driving these physiological processes.

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Coordinated leaf hydraulic thresholds maintain virtually null stomatal safety margins in poplar despite genetic variation and nutrient-induced phenotypic plasticity

CHASSAGNAUD, D.; BEZON, L.; LE JAN, I.; FICHOT, R.

2026-07-13 plant biology 10.64898/2026.07.10.737750 medRxiv
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The sequence of leaf physiological thresholds underlying plant responses to water deficit is thought to be functionally coordinated; yet, to what extent this coordination is maintained across genotypes and environments remains poorly documented at the intraspecific level. We characterized the sequence of stomatal closure, turgor loss and xylem embolism in the leaves of two genotypes of the riparian species Populus nigra (DRA-038 vs. PG-31) subjected to control, additional nitrogen or additional potassium treatments. Under control conditions, embolism measurements using the optical vulnerability method showed that DRA-038 was more vulnerable than PG-31, in agreement with measurements performed on stems with the reference Cavitron method. Stomatal closure consistently preceded xylem embolism, while bulk leaf turgor loss was typically observed once xylem embolism had already reached 50%. Hydraulic thresholds responded to treatments in a genotype-dependent manner, the intrinsically more vulnerable genotype DRA-038 being typically more plastic. However, despite variations across genotypes and treatments, the trait sequence remained tightly coordinated such that stomatal safety margins (SSMs) remained virtually null. These findings support a strong mechanistic integration of leaf hydraulic thresholds in poplar across genetic units and varying environments, questioning whether to favour intrinsic tolerance or plastic capacities in breeding future drought-tolerant genotypes.

6
miR319-targeted LsTCP4 and non-target LsTCP17 act in parallel to promote leaf senescence in lettuce

Jiang, T.; Tanwir, S. E.; Zammar, S.; Bradford, K. J.; Huo, H.

2026-07-14 plant biology 10.64898/2026.07.10.737324 medRxiv
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Leaf senescence directly affects lettuce quality and postharvest shelf life, but the regulatory roles of miR319-targeted and non-target CIN-TCP transcription factors remain unclear. Here, we examined whether the miR319-TCP module controls lettuce leaf senescence through separable genetic branches. MIR319 overexpression delayed dark-induced senescence, whereas STTM-mediated miR319 suppression accelerated chlorophyll loss, photosynthetic decline, and senescence-marker activation. Disruption of the miR319-targeted gene LsTCP4 phenocopied MIR319 overexpression, supporting LsTCP4 as a pro-senescence factor downstream of miR319. We further found that the miR319 non-target CIN gene LsTCP17 also promoted senescence, as tcp17 leaves retained more chlorophyll than wild type during dark treatment. Genetic combinations showed that tcp17 enhanced chlorophyll retention in the OX319 background and partially rescued the accelerated senescence phenotype of S319, indicating that LsTCP17 acts through a route separable from the miR319-targeted branch. Together, these results reveal a split CIN-TCP architecture in which miR319-targeted LsTCP4 and non-target LsTCP17 provide parallel pro-senescence inputs, offering a genetic framework for targeted improvement of lettuce quality.

7
Non-plastic gene expression underlies root phenotypes involved in drought adaptation in Vitis spp.

Chedid, E.; Patin, E. R.; Tran, J.; de Miguel, M.

2026-07-10 plant biology 10.64898/2026.07.09.737455 medRxiv
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Drought is a major abiotic stress threatening plant productivity and agricultural sustainability, yet the molecular mechanisms underlying adaptive root responses to water deficit in the water use strategies continuum remain insufficiently understood, particularly in perennial crops. In this study, we explored drought responses in nine accessions belonging to three wild Vitis species (V. acerifolia, V. candicans, and V. doaniana) displaying varying drought-response strategies. Plants were subjected to moderate drought stress (40% soil water content) for three weeks under greenhouse conditions. By integrating physiological, metabolic, and transcriptomic analyses, we aimed to identify both conserved and species-specific mechanisms associated with drought adaptation. Differential expression analyses revealed a conserved core set of drought-responsive genes shared among species, including genes involved in abscisic acid signaling, reactive oxygen species detoxification, solute transport, and plant defense. In parallel, each species exhibited distinct transcriptional and metabolic signatures reflecting alternative adaptive strategies related to osmoregulation, and oxidative stress mitigation. Weighted gene co-expression network analysis (WGCNA) further revealed significant associations between constitutive, non-plastic gene expression and root phenotypic traits. Overall, our findings demonstrate that wild Vitis species rely on both conserved stress-responsive pathways and species-specific constitutive regulation to cope with drought stress. These results highlight the importance of root-associated traits and intrinsic regulatory networks in shaping drought adaptation and provide new targets for the development of drought-resilient grapevine rootstocks.

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Cereal grafting in rice and pearl millet preserves photosynthetic performance and stomatal dynamics, establishing a platform for root-shoot communication studies

Mbaluto, C.;Martinez-Goni, X.;Tripathi, A.;Singh, P.

2026-06-26 Plant Biology 10.64898/2026.06.25.734459 medRxiv
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O_LICereal grafting using embryonic tissues has recently become technically feasible; however, the physiological consequences of cereal grafting remain uncharacterized. C_LIO_LIWe systematically evaluate photosynthetic performance and stomatal dynamics across different graft combinations in two photosynthetically distinct species, rice (C3) and pearl millet (C4). We first assessed steady-state photosynthetic performance and dynamic stomatal responses in five-week-old rice and pearl millet grafts grown under a saturated water regime, to establish whether cereal grafting alters physiology at early stages. Next, we assessed same traits at the onset of optimal water regime, and after five days to determine whether any graft-induced effects on photosynthesis or growth persisted over time. C_LIO_LIWe observed that across contrasting water regimes and at different plant developmental stages, cereal grafting did not alter growth, photosynthesis or stomatal kinetics in either species, while revealing modest early stage C4-specific adjustments in stomatal dynamics without affecting photosynthetic capacity or biochemical parameters. C_LIO_LIWe demonstrate that cereal grafting does not alter core physiological traits in rice or pearl millet and can be deployed without long-term impact on photosynthesis. These findings establish cereal grafting as a tractable platform for mechanistic dissection of root-shoot signaling and trait combination across different C3 and C4 cereals. C_LI

9
Transcriptomic analysis of FER-RALF-LRX pathway mutants suggests constitutive gene expression defects contribute to powdery mildew resistance

Leicher, H.; Fenn, A.; Messerer, M.; Wurmser, C.; Hückelhoven, R.; Kamal, N.; Stegmann, M.

2026-07-09 plant biology 10.64898/2026.06.25.734470 medRxiv
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The receptor kinase FERONIA (FER) perceives endogenous RAPID ALKALINIZATION FACTOR (RALF) peptides and regulates a plethora of plant physiological processes, including immunity. RALF peptides also bind to LEUCINE-RICH REPEAT EXTENSIN (LRX) proteins as structural components of the cell wall. We recently showed that the FER-RALF-LRX pathway supports colonization by the obligate biotrophic fungal pathogen Erysiphe cruciferarum (Ecr), a member of the powdery mildew species complex that infects Arabidopsis. Genetic disruption of the pathway primarily affects conidiation of the fungus, raising the question of effects on fungal nutrition. To get further insight into the underlying mechanisms, we performed RNA sequencing (RNAseq) to identify differential transcriptional responses of FER-RALF-LRX pathway mutants upon Ecr infection. Surprisingly, our results revealed that pathway disruption has a limited impact on the overall transcriptional changes upon fungal infection. However, consistent with previous reports, FER-RALF-LRX pathway mutants show changes in basal expression of a plethora of genes, mainly associated with cell wall metabolism, jasmonic acid signalling, amino acid biosynthesis and secondary metabolism. Many of these genes are regulated by Ecr infection across genotypes, too. This raises the question whether these are relevant pathway components for powdery mildew host establishment downstream of the FER-RALF-LRX module. In summary, our data reveals new insights into FER-RALF-LRX-dependent responses that may support host susceptibility to biotrophic plant pathogens.

10
Differential drought sensitivity of total and active wheat rhizosphere microbiome during rainfall reduction

Samad, A.; Schmidt, R. L.; Azarbad, H.; Garbeva, P.; Tremblay, J.; Yergeau, e.

2026-07-09 microbiology 10.64898/2026.07.08.735272 medRxiv
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Root-associated microorganisms play a pivotal role in helping plants adapt to drought stress. However, the underlying mechanisms of the rhizospheric microbiome under limiting soil moisture remain largely unresolved. Integrating total and active microbiome analyses enables a more accurate interpretation of microbial responses to climate change-associated water stress. We assessed the effect of reduced rainfall on two wheat genotypes, drought-tolerant (DT) and drought-sensitive (DS), using rainout shelters that allowed 100%, 75%, 50%, and 25% of natural precipitation to reach the crop. At the peak of the growing season, rhizosphere samples were collected for metagenomic (MG) and metatranscriptome (MT) sequencing. In parallel, rhizosphere volatile organic compounds (VOCs) were collected and analysed. Differential expression analysis of metatranscriptomic data using metagenomic abundance as a cofactor was performed by comparing all treatments to the 100% precipitation control. Our results demonstrate that particularly oxidative stress-related transcripts intensify in DS as rainfall decreases. Transcriptomic shifts primarily involved upregulation of transcripts associated with antioxidant (catalase, superoxide dismutase), heat shock proteins (Hsp10, Hsp60, DnaK/DnaJ, GroEL, GroES), as well as microbial functions related to osmoregulation, proline and glycine betaine (PutA, PutP, OpuBB), and plant growth-promoting traits such as auxin production, phosphate solubilization. Moreover, volatile organic compound (VOC) emissions differed significantly between the control and drought treatments, with higher emissions, particularly acetates, in the DS genotype than in the DT genotype. Overall, pronounced drought-induced shifts in active microbial functions and VOC emissions indicate high sensitivity and functional plasticity of the active microbiome, whereas the total microbiome remains robust under medium drought.

11
Drought and Herbivory Shape Growth and Chemical Traits in Black Poplar (Populus nigra)

Weirauch, S. K.; Gressmann, H.; Reichelt, M.; Kaltenegger, E.; Schnitzler, J. P.; Unsicker, S. B.

2026-07-01 ecology 10.64898/2026.06.30.735551 medRxiv
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Due to climate change, extreme weather events such as droughts are becoming more frequent and intense. This has a profound impact on plant performance and ecological interactions, including those involving herbivorous insects. The combined impact of drought stress and insect herbivory on plant metabolism has rarely been studied, particularly in woody plants. In this study, we investigated the influence of varying degrees of drought, both alone and in combination with herbivory by the leaf beetle Chrysomela tremulae, on the morphological and chemical characteristics of black poplar (Populus nigra) trees using a full factorial experimental design. We quantified morphological traits, volatile organic compound (VOC) emissions, phytohormone and amino acid concentrations, and phenolic profiles. Drought conditions increased the concentrations of salicylic acid (SA) and abscisic acid (ABA), while feeding induced ABA and SA. Amino acid profiles shifted significantly under drought conditions, particularly in beetle-infested plants. In contrast, salicinoids, which are the most important phenolic defense compounds in poplars, remained relatively stable. We also observed significant compound-specific effects on both constitutive and herbivore-induced VOC emissions. Our results demonstrate that drought and insect herbivory exert a joint influence on the chemical responses of P. nigra across multiple metabolic pathways. These findings highlight how the interaction between abiotic and biotic stresses can influence the defense chemistry of trees, which will consequently affect ecological interactions in forest ecosystems in the face of climate change.

12
Selective autophagy promotes bacterial immunity under warming through NBR1-dependent regulation of ABI5

Anzardi Ruffino, L.; Suarez, J.; Yanez Santos, A. M.; Lobatto, V. L.; Mary, V. S.; Theumer, M. G.; Mesquida Nardini, M. C.; Cecchini, N. M.; Lascano, H. R.; Lescano Lopez I, I.

2026-07-09 plant biology 10.64898/2026.07.01.735842 medRxiv
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Elevated temperatures compromise plant immunity and increase susceptibility to bacterial pathogens through extensive reprogramming of hormone signaling pathways. Although autophagy contributes to both stress adaptation and pathogen defense, its role in hormone-dependent immune regulation under warm conditions remains unclear. Here, we investigated the contribution of NBR1 (NEIGHBOR OF BRCA1 GENE 1)-mediated selective autophagy to Arabidopsis immunity against Pseudomonas cannabina pv. alisalensis at elevated temperature. Bacterial infection under warming enhanced autophagic flux and promoted NBR1 turnover, indicating increased autophagic activity. Analysis of atg5 and nbr1 mutants, and NBR1-overexpressing lines, demonstrated that both core autophagy and NBR1-mediated selective autophagy contribute to bacterial immunity under warm conditions. Hormone and gene expression analyses indicated that NBR1 negatively regulates abscisic acid (ABA)-associated transcriptional responses during infection, while salicylic acid signaling was largely unaffected. Mechanistically, NBR1 physically associated with the ABA-responsive transcription factor ABI5 (ABA INSENSITIVE 5) and promoted its autophagy-dependent turnover in planta. ABI5 turnover was strongly reduced under warm conditions, leading to its accumulation in nbr1 and atg5 plants. Consistent with a functional role for ABI5 in this phenotype, genetic disruption of ABI5 largely reversed the increased susceptibility of nbr1 mutants at elevated temperature, whereas ABI5 overexpression increased susceptibility to bacterial infection. Together, our results identify NBR1-mediated selective autophagy as a regulatory mechanism that restrains ABA-associated susceptibility through the autophagy-dependent turnover of ABI5. These findings reveal a previously unrecognized connection between selective autophagy and ABA-dependent immune regulation and identify NBR1-mediated ABI5 turnover as a temperature-dependent mechanism that prevents stronger bacterial susceptibility under warm conditions.

13
Comparative Metabolomic Profiling Reveals Salinity Tolerance Mechanisms in a Rice Introgression Line

Chaudhary, C.; Guttula, P.; Agrawal, K.; Subudhi, P. K.; Gartia, M. R.

2026-07-07 plant biology 10.64898/2026.07.06.736799 medRxiv
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Rice (Oryza sativa) is highly sensitive to salinity, yet the metabolic mechanisms underlying salt tolerance remains incompletely understood. In this study, we performed leaf tissue-specific untargeted metabolomic profiling of the salt-tolerant introgression line JN100 (JN), its donor parent Nona Bokra (NB), and its recurrent parent Jupiter (JU) to characterize metabolic responses to salt stress. Comparative analysis identified differentially accumulated metabolites (DAMs) spanning diverse chemical classes, including amino acids, sugars and carbohydrates, lipids, organic acids, cofactors, electron carriers, and nucleotides. Under salt stress (SS), 201 DAMs (89 upregulated and 112 downregulated) were detected in JN relative to JU. Notably, metabolites such as allantoin, glycitin, nicotinamide ribotide, D-arabinono-1,4-lactone, violanthin, L-methionine S-oxide, ribitol, lysine, rutin, glutamine, pantothenic acid, and quinic acid, showed significant differential accumulation. Pathway enrichment analysis revealed significant enrichment of arginine biosynthesis, purine metabolism, and alanine, aspartate, and glutamate metabolism, indicating extensive reprogramming of nitrogen and energy-associated metabolic pathways under salinity stress. Integration of transcriptomic and metabolomic datasets from the SS experiments further identified ten differentially expressed genes (DEGs) associated with the metabolite network in the JN vs. JU comparison. Among these, OsDHQDT/SDH, OsFd-GOGAT, phenylalanyl-tRNA synthetase, OsP5CS1, OsP5CS2, and a pyridoxal phosphate-dependent transferase were linked to metabolites involved in shikimate, amino acid, and proline metabolism. Collectively, these results demonstrate that salinity tolerance in rice is associated with coordinated transcriptional and metabolic reprogramming that supports oxidative stress mitigation and adaptive stress responses.

14
Biuret inhibits Arabidopsis root growth through an active, reversible, and genetically tractable developmental response

Protto, V.;Thiry, V.;Didier, A.;Perez, T.;Krouk, G.;Lacombe, B.;Medici, A.

2026-06-30 Plant Biology 10.64898/2026.06.29.735191 medRxiv
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Biuret, a nitrogen-rich by-product of urea and a common contaminant of urea-based fertilisers, has long been considered a passive phytotoxin, affecting plant performances. Yet its effects on root development and the existence of endogenous mechanisms of perception or tolerance remain largely uncharacterised. Here we combined physiological, developmental, genetic and transcriptomic approaches to investigate the response of Arabidopsis thaliana to biuret. Biuret inhibited primary root growth in a dose-dependent manner by reducing meristematic cell division rather than cell elongation, and concomitantly impaired shoot growth by limiting leaf expansion. This root inhibition was reversible upon biuret removal and was accompanied by increased auxin-responsive (DR5) and decreased cytokinin-responsive (TCS) outputs at the root apex, consistent with a regulated remodelling of meristem activity rather than purely cumulative damage. A forward genetic screen identified the biuret-resistant mutant bir29, which sustained root and inflorescence development under inhibitory concentrations. Using {superscript 1}N-labelled biuret, we showed that resistance occurred without any change in biuret influx or accumulation, uncoupling sensitivity from exposure. Whole-genome transcriptomics revealed that bir29 fails to execute the wild-type response, neither repressing the cell-cycle machinery nor deploying the stress-associated programme induced by biuret. Genetic characterisation linked resistance to multiple genomic loci required for full resistance. Together, the results indicate that biuret triggers an active, reversible and genetically tractable developmental response, suggesting that this xenobiotic compound is integrated into endogenous signalling networks. Significance StatementBiuret, a poorly metabolised contaminant of urea fertilisers, is generally regarded as a passive phytotoxin, yet we show that it inhibits Arabidopsis root growth through a reversible and genetically tractable developmental response, accompanied by reorganised auxin and cytokinin signalling, rather than through cumulative chemical injury. The isolation of the resistant mutant bir29 suggests that plants integrate this xenobiotic molecule into endogenous signalling networks, reframing biuret as an informative probe of root developmental regulation.

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Far-red timing uncovers cultivar-dependent yield and bolting responses in vertical-farm spinach (Spinacia oleracea L.)

McGovern, C.; Adrio, M.; Aliki, H.; Vichos, R.; Powell, W.; Sharma, R.

2026-07-13 plant biology 10.64898/2026.07.10.737849 medRxiv
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Far-red light (FR; 700-750 nm) is increasingly incorporated into controlled-environment lighting because it can improve photosynthetic efficiency when combined with comparatively shorter wavelengths. In long-day leafy crops such as spinach, however, FR may also promote the transition from vegetative to reproductive growth and thereby reduce marketable yield. Most studies have evaluated FR fraction, intensity or end-of-day exposure, whereas the developmental timing of FR has rarely been tested, particularly in spinach. Here, we evaluated six commercial spinach cultivars (Amador, Harp, Renegade, Responder, Rubino and Santa Cruz) in an indoor vertical farm under a common red-green-blue background (PPFD 260-264 {micro}mol m-{superscript 2} s-{superscript 1}, 12 h photoperiod, 24 {degrees}C) and four FR timing treatments: no FR (Control), FR throughout production (FullFR), FR during early development only (EarlyFR), and FR during late development only (LateFR). LateFR increased marketable fresh weight relative to Control (244 vs 224 g) and reduced flowering incidence, whereas far-red supplied during early development reduced fresh weight (158 g) and increased flowering. The magnitude of the timing response differed among cultivars: switching from EarlyFR to LateFR recovered 0 % fresh weight in Amador but 107 % in Renegade and Rubino, with the largest penalties occurring in otherwise bolt-resistant cultivars. EarlyFR also increased total chlorophyll and reduced the chlorophyll a:b ratio. These results show that FR response in spinach is strongly conditioned by developmental stage and cultivar. Although LateFR received more total far-red than EarlyFR, it behaved like the Control, indicating that the penalty was set by far-red timing rather than dose. Treatment differences in bolting and yield tracked an estimated phytochrome photostationary-state deficit during early development: a phytochrome-deficit model markedly outperformed a cumulative-dose model ({Delta}AIC = 441), and the deficit x cultivar interaction was strong (p < 0.001), with bolt-resistant cultivars losing most yield when far-red coincided with the early developmental window. We therefore propose that FR should be treated as a genotype-dependent management variable rather than as a fixed spectral input, with late application and bolt-resistant cultivars offering the most favourable combination for vertical-farm spinach production. Framed within the breeders equation, the close match between the trial and production environment and the scope for shorter breeding cycles indoors suggest that genotype and far-red timing can be optimised jointly to accelerate genetic gain.

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Extending the least-cost theory of stomatal regulation to include soil moisture stress

Sandoval, D.;Flo, V.;Zhang, H.;Prentice, I.

2026-06-23 Plant Biology 10.64898/2026.06.23.733952 medRxiv
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O_LITerrestrial biosphere models commonly use empirical scaling factors to represent soil moisture constraints on carbon and water fluxes, but these lack mechanistic grounding and produce inconsistent estimates of soil moisture limitations on primary production and transpiration across models. C_LIO_LIHere we extended the least-cost hypothesis for optimal stomatal conductance to account for soil moisture limitations by allowing soil water availability to modulate the carbon cost of water transport, drawing on the observed temperature dependence of stem respiration, and derived a simple empirical approximation to the theory using global {delta}13C and eddy covariance data. C_LIO_LIThe empirical analysis shows moderated thermal acclimation of stem respiration and a weak increase in water transport costs with aridity, supporting the interpretation that the decline in light-use efficiency (LUE) under arid conditions is primarily attributable to non-stomatal limitations. C_LIO_LIValidation against an independent global dataset of sapflow-derived canopy conductance and transpiration shows that the revised scheme significantly improves the predictive power of the least-cost hypothesis, offering a more mechanistically coherent alternative to existing soil moisture parameterisations. C_LI

17
Nutrient Availability Modulates Beneficial Effect of Bacterial Community Volatiles and Contact-Dependent Interactions Differently

Türksoy, G. M.; Stollenwerk, J.; Berka, M.; Cerny, M.; Kopriva, S.

2026-07-13 plant biology 10.64898/2026.07.12.738021 medRxiv
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Plant growth-promoting bacteria enhance plant performance, yet how different modes of plant-microbe interaction shape nutrient-specific host responses remains poorly understood. In particular, it is unclear how direct bacterial contact and volatile-mediated interactions originating from the same bacterial community differentially regulate plant nutrient acquisition pathways. Here, we investigated how a 16-member synthetic bacterial community (16SC) affects plant growth, nutrient status, signaling, and metabolite profiles under full nutrient supply as well as nitrogen (N), sulfur (S), and phosphorus (P) limitation in Arabidopsis thaliana. We show that volatile organic compounds (VOCs) emitted by the 16SC promote shoot growth under nitrate limitation and full nutrient conditions, whereas this growth promotion is lost under sulfur- and phosphorus-limiting conditions. In contrast, direct interaction (DBC) between plants and the 16SC abolishes growth promotion under all three nutrient-limiting conditions. These nutrient-dependent phenotypes correlate with distinct regulation of nutrient transporters and key transcriptional regulators involved in N (NRT1;1 / NLP7), S (SULTR1;2 / SLIM1/EIL3), and P (PHO2 / PHR1) signaling pathways. Genetic analyses using nutrient transporter mutants revealed that VOC-induced growth promotion requires functional NRT1;1 and SULTR1;2 transporters, whereas growth promotion mediated by direct bacterial contact is retained in the corresponding mutants. This uncoupling of VOC- and contact-dependent effects indicates that distinct host regulatory pathways underlie bacterial community growth promotion depending on the interaction mode. Together, our findings demonstrate that bacterial community-mediated plant growth promotion is strongly shaped by nutrient context and interaction mode, and that volatile-mediated and contact-dependent mechanisms engage separable host nutrient regulatory networks.

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Arbuscular mycorrhizal symbiosis increases drought resistance in the xerophytic argan tree ( Sideroxylon spinosum )

Essahibi, A.;Falquet, L.;Esseiva, A.;Qaddoury, A.;Mateus, I.;Reinhardt, D.

2026-06-23 Plant Biology 10.64898/2026.06.20.733516 medRxiv
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The xerophyte argan (Sideroxylon spinosum) has great ecological and socioeconomic importance for Morocco. However, it is endangered due to climate change and human overexploitation. We assess drought resistance traits of argan and test the potential of arbuscular mycorrhizal (AM) symbiosis to promote its growth and mitigate the consequences of drought. We compare ten endemic Moroccan mycorrhizal inocula with the model AM fungus Rhizophagus irregularis and with the drought-adapted isolate Diversispora omaniana. We integrated physiological phenotyping and RNA sequencing to investigate the stress resistance mechanisms of argan against drought. We show that AM symbiosis significantly mitigates drought effects on plant growth, mainly by improving water relations and photosynthetic efficiency, resulting in increased growth rates. Taken together, physiological and transcriptomic analyses show that stress markers were moderatly induced during severe drought stress irrespective of mycorrhizal status, suggesting that argan adopts a drought-coping strategy that involves both, stress avoidance and stress tolerance. Argan is highly AM-responsive, both at the phenotypic and transcriptomic level, suggesting that AM has great potential to promote argan growth under drought stress.

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Enhanced production of nitrogenase components in Nicotiana benthamiana through co-expression with Bacterioferritin A

Armas, A.;Escudero, V.;Quintana, J.;Rodriguez-Simon, M.;Abreu, I.;Collantes-Garcia, J.;Gupta, B.;Ansorena, E.;Raimunda, D.;Rubio, L.;Gonzalez-Guerrero, M.

2026-06-30 Plant Biology 10.64898/2026.06.29.734789 medRxiv
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O_LIEngineering nitrogen fixing crops requires not only transferring the nitrogenase structural genes, but also the accessory genes to synthesize its iron-sulphur cofactors. Scaffold protein NifU is a critical element in this system as the starting point of nitrogenase cofactor assembly. NifU has been successfully produced in plants, however, its optimal production required high levels of iron in the medium. This is likely due to a faulty connection with the endogenous iron trafficking network C_LIO_LITo identify specific elements targeting iron to NifU, pull-down assays were performed to identify showing bacterioferritin A (BfrA) as a likely candidate. Co-immunopurification, mutant characterization, iron transfer assays, and co-expression in Nicotiana benthamiana assays were carried out. C_LIO_LIBfrA transfers iron to NifU through protein-protein interactions. When these two proteins were co-expressed in N. benthamiana leaves, there was an increase in NifU production. In turn, it led to doubling NifH synthesis, a nitrogenase structural protein that is also required for the synthesis of the more complex nitrogenase cofactors. C_LIO_LIOur results provide a new element towards engineering nitrogen-fixing crops. They also underscore the importance of transferring the metal delivery systems when expressing metalloproteins in heterologous systems. C_LI

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Identification of Seed Metabolites and Microbiota members associated with Germination and Emergence in Common Bean

Colaert-Sentenac, L.; Planchet, E.; Abadie, C.; Lalande, J.; Hamdy, S.; Marais, C.; Dupont, A.; Le Corre, L.; Koutouan, C.-E.; Wagner, M.-H.; Barret, M.; Tcherkez, G.; Teulat, B.; Simonin, M.

2026-07-08 plant biology 10.64898/2026.06.16.732447 medRxiv
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Seed quality is a complex trait shaped by morphological, biochemical and microbiological properties that are rarely characterised simultaneously, limiting our ability to identify robust predictive indicators of germination speed and seedling emergence across varieties. Here, we performed a multi-factor characterisation of eight common bean (Phaseolus vulgaris L.) varieties, combining seed morphometrics, untargeted GC-MS metabolomics on three seed organs, and amplicon sequencing of bacterial and fungal communities, to identify indicators of germination speed and emergence percentage. The eight varieties showed substantial variation in both traits, used as physiological seed quality proxies. Seed weight and size variation between varieties were correlated with germination speed. The intravariety variance of seed weight was independently correlated with emergence performance. Metabolome composition differed strongly across seed organs, with variety as the dominant driver. Individual-seed metabolomic profiles in the plumule and cotyledon were associated with germination speed but not emergence, yielding 16 plumule and three cotyledon candidate metabolite markers. Fungal community composition was associated with both germination speed and emergence, while bacterial communities were associated with emergence only. Nine fungal and four bacterial taxa were identified as candidate indicators. Inter-kingdom co-occurrence network analysis revealed that fungi with similar germination speed associations tend to cluster in the same modules, suggesting that community-level modules rather than individual taxa may constitute more robust microbial indicators. These results demonstrate that germination speed and emergence capacity are governed by distinct seed properties, and provide morphological, metabolic and microbial candidate indicators for integration into targeted seed quality assessment frameworks for common bean.